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ProteoWizard
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#include "pwiz/utility/misc/Export.hpp"#include "IdentData.hpp"#include "pwiz/utility/misc/IterationListener.hpp"Go to the source code of this file.
Classes | |
| class | pwiz::identdata::Serializer_pepXML |
| MZIDData <-> pepXML stream serialization. More... | |
| struct | pwiz::identdata::Serializer_pepXML::Config |
| Serializer_pepXML configuration. More... | |
| struct | pwiz::identdata::PepXMLSpecificity |
Namespaces | |
| namespace | pwiz |
| namespace | pwiz::identdata |
Functions | |
| PWIZ_API_DECL PepXMLSpecificity | pwiz::identdata::pepXMLSpecificity (const Enzyme &ez) |
| converts an identdata::Enzyme into a pepXML cut/no_cut/sense tuple | |
| PWIZ_API_DECL std::string | pwiz::identdata::stripChargeFromConventionalSpectrumId (const std::string &id) |
| strips charge state from known conventions of the pepXML spectrum attribute; used to find a unique identifier for a spectrum in order to merge charge states | |
| PWIZ_API_DECL CVID | pwiz::identdata::pepXMLSoftwareNameToCVID (const std::string &softwareName) |
| converts a software name stored in pepXML software element into its corresponding CVID, or CVID_Unknown if no mapping was found | |
| PWIZ_API_DECL const std::string & | pwiz::identdata::softwareCVIDToPepXMLSoftwareName (CVID softwareCVID) |
| converts a software CVID to the preferred name for that software in pepXML; an unrecognized software name will return an empty string | |
| PWIZ_API_DECL CVID | pwiz::identdata::pepXMLScoreNameToCVID (CVID softwareCVID, const std::string &scoreName) |
| for a given software CVID, converts a pepXML score name into its corresponding CVID, or CVID_Unknown if no mapping was found | |
| PWIZ_API_DECL const std::string & | pwiz::identdata::scoreCVIDToPepXMLScoreName (CVID softwareCVID, CVID scoreCVID) |
| for a given software CVID, converts a score CVID into the preferred name for that score in pepXML; an invalid combination of software/score will return an empty string | |
| PWIZ_API_DECL CVID | pwiz::identdata::nativeIdStringToCVID (const std::string &id) |
| attempts to convert a period-delimited id into a nativeID format (e.g. "1.0.123" appears to be a Thermo nativeID) | |