Here is a list of all class members with links to the classes they belong to:
- c -
- c() : pwiz::proteome::Fragmentation, SHA1_WORKSPACE_BLOCK
- c1 : TestFragmentation
- c1Plus2 : TestFragmentation
- c2d_ : ralab::base::ms::PeakPicker< TReal, TIntegrator >
- C_ : DemuxDebugRWTest
- c_str() : pwiz::minimxml::SAXParser::saxstring
- cache() : pwiz::proteome::ProteinListCache, TestOutputObserver
- cache_ : pwiz::analysis::RegionSIC, pwiz::analysis::RegionSlice, pwiz::analysis::RegionTIC, pwiz::analysis::RunSummary, pwiz::analysis::SpectrumBinaryData, pwiz::analysis::SpectrumTable, pwiz::proteome::ProteinListCache
- CacheEntry() : pwiz::msdata::SpectrumListCache::CacheEntry
- cacheMaxMass : pwiz::chemistry::IsotopeEnvelopeEstimator::Config
- cacheSize : pwiz::chemistry::IsotopeEnvelopeEstimator::Config
- CacheType : pwiz::msdata::SpectrumListCache, pwiz::proteome::ProteinListCache
- calcCorrelation() : pwiz::analysis::CwtPeakDetector
- calcNeutralPepMass : pwiz::data::pepxml::SearchHit
- calculatedMass : pwiz::data::pepxml::Match
- calculatedMassToCharge : pwiz::identdata::SpectrumIdentificationItem
- calculatedPI : pwiz::identdata::SpectrumIdentificationItem
- calculateMetadata() : pwiz::data::peakdata::Feature, pwiz::data::peakdata::Peakel
- calculateNoise() : pwiz::analysis::NoiseCalculator, pwiz::analysis::NoiseCalculator_2Pass
- CalibrationParameters() : pwiz::data::CalibrationParameters
- calibrationParameters() : pwiz::data::FrequencyData, pwiz::data::peakdata::Scan
- cancelIndex_ : CancelListener
- CancelListener() : CancelListener
- CancelProgressCallback() : CancelProgressCallback
- canConvertIonMobilityAndCCS() : pwiz::analysis::SpectrumList_IonMobility, pwiz::msdata::detail::SpectrumList_Agilent, pwiz::msdata::detail::SpectrumList_Bruker, pwiz::msdata::detail::SpectrumList_Thermo, pwiz::msdata::detail::SpectrumList_Waters, pwiz::msdata::SpectrumListIonMobilityBase
- capacity() : pwiz::minimxml::SAXParser::saxstring, pwiz::util::BinaryData< T >
- cbegin() : pwiz::util::BinaryData< T >
- ccsToIonMobility() : pwiz::analysis::SpectrumList_IonMobility, pwiz::msdata::detail::SpectrumList_Agilent, pwiz::msdata::detail::SpectrumList_Bruker, pwiz::msdata::detail::SpectrumList_Thermo, pwiz::msdata::detail::SpectrumList_Waters, pwiz::msdata::SpectrumListIonMobilityBase
- cend() : pwiz::util::BinaryData< T >
- center() : pwiz::frequency::MagnitudeLorentzian, pwiz::math::Parabola
- chainIndex : scoreChain
- char_type : pwiz::minimxml::basic_charcounter< Ch >, pwiz::util::SHA1SymmetricFilter
- characters() : FifthHandler, FirstHandler, PrintEventHandler, pwiz::data::peakdata::HandlerPeak, pwiz::minimxml::basic_charcounter< Ch >, pwiz::minimxml::SAXParser::Handler, pwiz::minimxml::XMLWriter, SecondHandler
- charge : isoChain, isotopeChain, pwiz::analysis::PrecursorRecalculator::PrecursorInfo, pwiz::analysis::SpectrumList_PrecursorRefine::PrecursorInfo, pwiz::data::peakdata::Feature, pwiz::data::peakdata::PeakFamily, pwiz::frequency::PeakDetectorMatchedFilter::Score, pwiz::identdata::IonType
- Charge : pwiz::identdata::Serializer_Text
- charge : pwiz::msdata::SpectrumInfo::PrecursorInfo, pwiz::util::MSIHandler::Record
- charge_state : TestSpectrumInfo
- charges : pwiz::analysis::RunSummary::Config
- chargeState : pwiz::identdata::SpectrumIdentificationItem
- chargeStateArray : TestChargeStateCalculator
- chargeStates : pwiz::util::MSIHandler::Record
- chargeStateSet_ : pwiz::analysis::SpectrumList_FilterPredicate_ChargeStateSet
- chargeTrue : TestInfo
- CharIndexedVector() : pwiz::util::CharIndexedVector< T >
- CharIndexedVectorConstIterator() : pwiz::util::CharIndexedVectorConstIterator< T >
- CharIndexedVectorIterator() : pwiz::util::CharIndexedVectorIterator< T >
- chars_ : pwiz::minimxml::basic_charcounter< Ch >
- checkDelimiter() : pwiz::analysis::TabularConfig
- CheckForError() : pwiz::analysis::CubicHermiteSpline
- child() : pwiz::identdata::TextWriter, pwiz::msdata::TextWriter, pwiz::proteome::TextWriter, pwiz::tradata::TextWriter
- chromatogram() : MyBase, pwiz::analysis::ChromatogramList_Filter, pwiz::analysis::ChromatogramList_LockmassRefiner, pwiz::analysis::ChromatogramList_SavitzkyGolaySmoother, pwiz::analysis::ChromatogramListWrapper
- Chromatogram() : pwiz::msdata::Chromatogram
- chromatogram() : pwiz::msdata::ChromatogramList, pwiz::msdata::ChromatogramListSimple, pwiz::msdata::detail::ChromatogramList_ABI, pwiz::msdata::detail::ChromatogramList_Agilent, pwiz::msdata::detail::ChromatogramList_Bruker, pwiz::msdata::detail::ChromatogramList_Shimadzu, pwiz::msdata::detail::ChromatogramList_Thermo, pwiz::msdata::detail::ChromatogramList_Waters
- chromatogramCount() : pwiz::msdata::Index_mzML
- chromatogramIdentity() : MyBase, pwiz::analysis::ChromatogramList_Filter, pwiz::analysis::ChromatogramListWrapper
- ChromatogramIdentity() : pwiz::msdata::ChromatogramIdentity
- chromatogramIdentity() : pwiz::msdata::ChromatogramList, pwiz::msdata::ChromatogramListSimple, pwiz::msdata::detail::ChromatogramList_ABI, pwiz::msdata::detail::ChromatogramList_Agilent, pwiz::msdata::detail::ChromatogramList_Bruker, pwiz::msdata::detail::ChromatogramList_Shimadzu, pwiz::msdata::detail::ChromatogramList_Thermo, pwiz::msdata::detail::ChromatogramList_Waters, pwiz::msdata::Index_mzML
- ChromatogramList_Filter() : pwiz::analysis::ChromatogramList_Filter
- ChromatogramList_FilterPredicate_IndexSet() : pwiz::analysis::ChromatogramList_FilterPredicate_IndexSet
- ChromatogramList_LockmassRefiner() : pwiz::analysis::ChromatogramList_LockmassRefiner
- ChromatogramList_SavitzkyGolaySmoother() : pwiz::analysis::ChromatogramList_SavitzkyGolaySmoother
- ChromatogramList_XICGenerator() : pwiz::analysis::ChromatogramList_XICGenerator
- chromatogramListPtr : pwiz::msdata::Run
- ChromatogramListWrapper() : pwiz::analysis::ChromatogramListWrapper
- chromatograms : pwiz::msdata::ChromatogramListSimple
- circle() : pwiz::util::Image
- clear() : pwiz::data::ParamContainer, pwiz::identdata::Pep2MzIdent, pwiz::minimxml::SAXParser::saxstring, pwiz::proteome::ModificationMap, pwiz::util::BinaryData< T >, pwiz::util::CharIndexedVector< T >, pwiz::util::mru_list< Item, KeyExtractor >, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- clearBinaryData() : pwiz::msdata::SpectrumInfo
- clip() : pwiz::util::Image
- clipNTerminalMethionine : pwiz::proteome::Digestion::Config
- close() : pwiz::analysis::MSDataAnalyzer, pwiz::analysis::MSDataAnalyzerContainer, pwiz::analysis::PepxmlRecordReader, pwiz::analysis::RegionAnalyzer, pwiz::analysis::RegionSIC, pwiz::analysis::RegionSlice, pwiz::analysis::RegionTIC, pwiz::analysis::RunSummary, pwiz::analysis::SpectrumTable, pwiz::util::DefaultTabHandler, pwiz::util::random_access_compressed_ifstream, pwiz::util::SHA1Calculator, pwiz::util::SHA1SymmetricFilter, pwiz::util::TabHandler, SimpleAnalyzer
- closed : SimpleAnalyzer
- cN : TestFragmentation
- cNPlus2 : TestFragmentation
- code : pwiz::identdata::AmbiguousResidue, pwiz::identdata::Residue
- coefficients() : pwiz::frequency::MagnitudeLorentzian, pwiz::math::Parabola
- Col : ridgeLine
- collapseRadius : pwiz::frequency::PeakDetectorMatchedFilter::Config
- Color() : pwiz::util::Image::Color
- color : Reader2::Config, Reader2::ReaderConfig
- columns() : pwiz::util::DefaultTabHandler
- combineIonMobilitySpectra : pwiz::msdata::Reader::Config
- comments : pwiz::data::pepxml::MixtureModel
- compare : TestOperator
- Component() : pwiz::msdata::Component
- componentList : pwiz::msdata::InstrumentConfiguration
- Compound() : pwiz::tradata::Compound
- compoundPtr : pwiz::tradata::Target, pwiz::tradata::Transition
- compoundPtrs : pwiz::tradata::TraData
- Compression : pwiz::msdata::BinaryDataEncoder
- compression : pwiz::msdata::BinaryDataEncoder::Config
- Compression_None : pwiz::msdata::BinaryDataEncoder
- Compression_Zlib : pwiz::msdata::BinaryDataEncoder
- compressionType : pwiz::util::random_access_compressed_ifstream
- Config() : pwiz::analysis::FeatureDetectorPeakel::Config, pwiz::analysis::MS2Deisotoper::Config, pwiz::analysis::MS2NoiseFilter::Config, pwiz::analysis::MSDataCache::Config, pwiz::analysis::NoiseCalculator_2Pass::Config, pwiz::analysis::PeakelGrower_Proximity::Config, pwiz::analysis::PeakelPicker_Basic::Config, pwiz::analysis::PeakFamilyDetectorFT::Config, pwiz::analysis::PeakFinder_SNR::Config, pwiz::analysis::PeakFitter_Parabola::Config
- config : pwiz::analysis::PepxmlRecordReader
- Config() : pwiz::analysis::PepxmlRecordReader::Config, pwiz::analysis::PrecursorMassFilter::Config, pwiz::analysis::PrecursorRecalculatorDefault::Config, pwiz::analysis::RegionAnalyzer::Config, pwiz::analysis::RegionSIC::Config, pwiz::analysis::RegionSlice::Config, pwiz::analysis::RegionTIC::Config, pwiz::analysis::RunSummary::Config, pwiz::analysis::SpectrumBinaryData::Config, pwiz::analysis::SpectrumTable::Config, pwiz::chemistry::IsotopeEnvelopeEstimator::Config, pwiz::frequency::FrequencyEstimatorPhysicalModel::Config
- config() : pwiz::frequency::PeakDetectorMatchedFilter
- Config() : pwiz::frequency::PeakDetectorMatchedFilter::Config, pwiz::identdata::Reader::Config, pwiz::identdata::Serializer_mzIdentML::Config, pwiz::identdata::Serializer_pepXML::Config, pwiz::identdata::Serializer_protXML::Config, pwiz::identdata::Serializer_Text::Config, pwiz::minimxml::XMLWriter::Config, pwiz::msdata::BinaryDataEncoder::Config, pwiz::msdata::Reader::Config, pwiz::msdata::Serializer_mzML::Config, pwiz::msdata::Serializer_mzXML::Config, pwiz::msdata::SpectrumIterator::Config, pwiz::proteome::Digestion::Config, pwiz::proteome::Reader_FASTA::Config, pwiz::proteome::Serializer_FASTA::Config
- config : Reader1
- Config() : Reader1::Config
- config : Reader2
- Config() : Reader2::Config
- config_ : pwiz::analysis::NoiseCalculator_2Pass, pwiz::analysis::PeakelGrower_Proximity, pwiz::analysis::PeakelPicker_Basic, pwiz::analysis::PeakFinder_SNR, pwiz::analysis::PeakFitter_Parabola, pwiz::analysis::RegionSIC, pwiz::analysis::RegionTIC, pwiz::analysis::RunSummary, pwiz::analysis::SpectrumBinaryData, pwiz::analysis::SpectrumTable, pwiz::data::Diff< object_type, config_type, object_result_type >, pwiz::data::diff_impl::Same< object_type, config_type >, pwiz::data::diff_impl::SameDeep< object_type, config_type >, pwiz::identdata::Serializer_mzIdentML, pwiz::identdata::Serializer_pepXML, pwiz::identdata::Serializer_protXML, pwiz::proteome::Reader_FASTA, pwiz::proteome::Serializer_FASTA
- configurationList : pwiz::tradata::Target, pwiz::tradata::Transition
- const_iterator : pwiz::analysis::PepxmlRecordReader, pwiz::data::FrequencyData, pwiz::math::OrderedPairContainerRef, pwiz::proteome::Digestion, pwiz::proteome::Digestion::const_iterator, pwiz::proteome::IPIFASTADatabase, pwiz::util::BinaryData< T >::const_iterator, pwiz::util::CharIndexedVector< T >, pwiz::util::CharIndexedVectorConstIterator< T >, pwiz::util::CharIndexedVectorIterator< T >, pwiz::util::IntegerSet, pwiz::util::mru_list< Item, KeyExtractor >, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >, pwiz::util::VectorTabHandler, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- const_iterator::Impl : pwiz::proteome::Digestion
- const_pointer : pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- const_ptr : pwiz::analysis::DemuxSolver, pwiz::analysis::IDemultiplexer, pwiz::analysis::IPrecursorMaskCodec
- const_reference : pwiz::util::BinaryData< T >, pwiz::util::CharIndexedVectorConstIterator< T >, pwiz::util::CharIndexedVectorIterator< T >, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- const_reverse_iterator : pwiz::util::BinaryData< T >, pwiz::util::CharIndexedVector< T >, pwiz::util::mru_list< Item, KeyExtractor >, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- Contact() : pwiz::identdata::Contact, pwiz::tradata::Contact
- contactPtr : pwiz::identdata::ContactRole, pwiz::tradata::Configuration, pwiz::tradata::Prediction
- contactPtrs : pwiz::tradata::TraData
- ContactRole() : pwiz::identdata::ContactRole
- contactRole : pwiz::identdata::Sample
- contactRolePtr : pwiz::identdata::AnalysisSoftware, pwiz::identdata::Provider
- contacts : pwiz::msdata::FileDescription
- container : pwiz::data::FrequencyData
- Contains() : pwiz::analysis::DemuxWindow
- contains() : pwiz::util::IntegerSet, pwiz::util::IntegerSet::Interval
- ContainsCenter() : pwiz::analysis::DemuxWindow
- Convert2Dense() : ralab::base::resample::Convert2Dense
- convert2dense() : ralab::base::resample::Convert2Dense
- copyDelimiterConfig() : pwiz::analysis::TabularConfig
- Correlation() : pwiz::math::MatchedFilter::Correlation< Y >
- correlation_data_type : pwiz::math::MatchedFilter::KernelTraits< Kernel >
- correlation_space_type : pwiz::math::MatchedFilter::KernelTraits< Kernel >
- correlation_type : pwiz::math::MatchedFilter::KernelTraits< Kernel >
- cosBx_ : ParametrizedCosine
- count : CancelProgressCallback, NestedHandler, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >, SimpleProgressCallback, TestListener, TestReader
- count_ : TestListener
- countFiltersApplied() : pwiz::msdata::MSData
- covariance() : pwiz::math::Stats
- cp : pwiz::analysis::PeakFamilyDetectorFT::Config
- crbegin() : pwiz::util::BinaryData< T >
- create() : pwiz::analysis::FeatureDetectorPeakel, pwiz::data::BinaryIndexStream, pwiz::data::Index, pwiz::data::MemoryIndex, pwiz::frequency::FrequencyEstimatorPhysicalModel, pwiz::frequency::FrequencyEstimatorSimple, pwiz::frequency::ParameterEstimator, pwiz::frequency::PeakDetectorMatchedFilter, pwiz::frequency::PeakDetectorNaive, pwiz::frequency::TruncatedLorentzianEstimator, pwiz::msdata::ChromatogramList_mzML, pwiz::msdata::SpectrumList_BTDX, pwiz::msdata::SpectrumList_MGF, pwiz::msdata::SpectrumList_MSn, pwiz::msdata::SpectrumList_mzML, pwiz::msdata::SpectrumList_mzXML, pwiz::util::Image
- createMap() : pwiz::identdata::CVMap
- creationDate : pwiz::identdata::IdentData
- crend() : pwiz::util::BinaryData< T >
- CSHA1() : CSHA1
- cSpline_ : pwiz::analysis::CubicHermiteSpline
- cTermGain : pwiz::identdata::Enzyme
- CTerminus() : pwiz::proteome::ModificationMap
- CTerminusIsSpecific() : pwiz::proteome::DigestedPeptide
- CTerminusIsSpecific_ : pwiz::proteome::DigestedPeptide
- CTerminusSuffix() : pwiz::proteome::DigestedPeptide
- CTerminusSuffix_ : pwiz::proteome::DigestedPeptide
- CubicHermiteSpline() : pwiz::analysis::CubicHermiteSpline
- CubicInterpolate() : ralab::base::base::utilities::CubicInterpolate< TReal >
- CubicSplineDummyInitialize() : CubicHermiteSplineTest
- current_ : pwiz::util::BinaryData< T >::const_iterator, pwiz::util::BinaryData< T >::iterator
- current_line : pwiz::identdata::DelimWriter
- customizations : pwiz::identdata::AnalysisSoftware
- CustomPair() : CustomPair
- cut : pwiz::data::pepxml::Specificity, pwiz::identdata::PepXMLSpecificity
- cutoffNoiseFloor() : pwiz::data::FrequencyData
- cvFilterItems : pwiz::analysis::SpectrumList_FilterPredicate_ActivationType, pwiz::analysis::SpectrumList_FilterPredicate_AnalyzerType
- cvid : pwiz::cv::CVTermInfo, pwiz::data::CVParam, pwiz::identdata::CVMap
- cvid_ : pwiz::data::CVParamIs, pwiz::data::CVParamIsChildOf
- CVIDMatchCVMap() : pwiz::identdata::CVIDMatchCVMap
- CVMap() : pwiz::identdata::CVMap
- CVParam() : pwiz::data::CVParam
- cvParam() : pwiz::data::ParamContainer
- cvParamChild() : pwiz::data::ParamContainer
- cvParamChildren() : pwiz::data::ParamContainer
- cvParamChildValueOrDefault() : pwiz::data::ParamContainer
- CVParamIs() : pwiz::data::CVParamIs
- CVParamIsChildOf() : pwiz::data::CVParamIsChildOf
- cvParams : pwiz::data::ParamContainer
- cvParamValueOrDefault() : pwiz::data::ParamContainer
- cvs : pwiz::identdata::IdentData, pwiz::msdata::MSData, pwiz::tradata::TraData
- CVTermInfo() : pwiz::cv::CVTermInfo
- CVTranslator() : pwiz::data::CVTranslator
- CwtPeakDetector() : pwiz::analysis::CwtPeakDetector
- cyclesInBlock_ : pwiz::analysis::OverlapDemultiplexer