Here is a list of all file members with links to the files they belong to:
- t -
- Ta : Chemistry.hpp
- TABULARCONFIG_DELIMITER_OPTIONS_STR : TabularConfig.hpp
- TABULARCONFIG_DELIMITER_USAGE_STR : TabularConfig.hpp
- targetXML : XMLWriterTest.cpp
- Tau : TruncatedLorentzian.hpp
- Tb : Chemistry.hpp
- Tc : Chemistry.hpp
- TCHAR : SHA1.h
- Te : Chemistry.hpp
- test() : MSDataFileTest.cpp, ReaderTest.cpp, MSDataMergerTest.cpp, MSnReaderTest.cpp, ReaderTest.cpp, ReferencesTest.cpp, SpectrumInfoTest.cpp, SpectrumList_MGF_Test.cpp, SpectrumList_MSn_Test.cpp, SpectrumList_mzML_Test.cpp, SpectrumList_mzXML_Test.cpp, SpectrumListBaseTest.cpp, SpectrumListCacheTest.cpp, LegacyAdapterTest.cpp, IOTest.cpp, DiffTest.cpp, ChromatogramListBaseTest.cpp, ChromatogramList_mzML_Test.cpp, BinaryDataEncoderTest.cpp, SampleDatumTest.cpp, PeakDataTest.cpp, FrequencyDataTest.cpp, CalibrationParametersTest.cpp, Serializer_Text_Test.cpp, Serializer_mzid_Test.cpp, ReferencesTest.cpp, AminoAcidTest.cpp, StatsTest.cpp, IPIFASTADatabaseTest.cpp, SHA1CalculatorTest.cpp, SHA1_ostream_test.cpp, mru_list_test.cpp, IterationListenerTest.cpp, IntegerSetTest.cpp, ExceptionTest.cpp, endian_test.cpp, ClickwrapPrompterTest.cpp, BinaryDataTest.cpp, Base64Test.cpp, almost_equal_test.cpp, XMLWriterTest.cpp, SAXParserTest.cpp, SpectrumListWrapperTest.cpp, OrderedPairTest.cpp, MZToleranceTest.cpp, IsotopeEnvelopeEstimatorTest.cpp, TraDataFileTest.cpp, ReferencesTest.cpp, ReaderTest.cpp, IOTest.cpp, DiffTest.cpp, ReaderTest.cpp, ProteomeDataFileTest.cpp, ProteinListWrapperTest.cpp, ProteinListCacheTest.cpp, PeptideTest.cpp, DiffTest.cpp, PeakDetectorMatchedFilterTest.cpp, ProteinList_FilterTest.cpp, PeptideIDMapTest.cpp, PeakFitterTest.cpp, PeakFinderTest.cpp, PeakFamilyDetectorFTTest.cpp, PeakExtractorTest.cpp, PeakelPickerTest.cpp, PeakelGrowerTest.cpp, NoiseTest.cpp, MZRTFieldTest.cpp, FeatureModelerTest.cpp, FeatureDetectorTuningTest.cpp, FeatureDetectorPeakelTest.cpp, MSDataAnalyzerTest.cpp, PeakDetectorNaiveTest.cpp, ProteinList_DecoyGeneratorTest.cpp, FrequencyEstimatorSimpleTest.cpp, FrequencyEstimatorPhysicalModelTest.cpp, ZeroSampleFillerTest.cpp, WhittakerSmootherTest.cpp, SavitzkyGolaySmootherTest.cpp, LocalMaximumPeakDetectorTest.cpp, ExtraZeroSamplesFilterTest.cpp, CwtPeakDetectorTest.cpp, SavitzkyGolaySmootherTest.cpp, ChromatogramListWrapperTest.cpp, ChromatogramListFactoryTest.cpp, ChromatogramList_LockmassRefinerTest.cpp, ChromatogramList_FilterTest.cpp, Pep2MzIdentTest.cpp, SpectrumList_SorterTest.cpp, KwCVMapTest.cpp, IOTest.cpp, DiffTest.cpp, UnimodTest.cpp, ParamTypesTest.cpp, obotest.cpp, MemoryIndexTest.cpp, diff_std_test.cpp, CVTranslatorTest.cpp, cvtest.cpp, BinaryIndexStreamTest.cpp, SpectrumListFactoryTest.cpp, ProteinListFactoryTest.cpp, SpectrumList_ScanSummerTest.cpp, SpectrumList_PrecursorRecalculatorTest.cpp, MS2DeisotoperTest.cpp, PrecursorRecalculatorDefaultTest.cpp, SpectrumList_3D_Test.cpp, SpectrumList_ChargeFromIsotopeTest.cpp, SpectrumList_ChargeStateCalculatorTest.cpp, SpectrumList_FilterTest.cpp, SpectrumList_IonMobility_Test.cpp, SpectrumList_LockmassRefinerTest.cpp, SpectrumList_MetadataFixerTest.cpp, SpectrumList_MZRefinerTest.cpp, SpectrumList_MZWindowTest.cpp, SpectrumList_PeakFilterTest.cpp, SpectrumList_PrecursorRefineTest.cpp
- test1() : IsotopeTableTest.cpp
- test2() : PrecursorRecalculatorDefaultTest.cpp, IsotopeTableTest.cpp
- test256() : Base64Test.cpp
- test3() : IsotopeTableTest.cpp
- test4() : IsotopeTableTest.cpp
- test5peptide() : PrecursorRecalculatorDefaultTest.cpp
- test5peptideFT() : SpectrumList_PrecursorRecalculatorTest.cpp
- test_2Pass() : NoiseTest.cpp
- test_2Pass_NoSignal() : NoiseTest.cpp
- test_compute() : MatchedFilterTest.cpp
- test_createFilter() : MatchedFilterTest.cpp
- test_createFilters() : MatchedFilterTest.cpp
- test_default_double() : almost_equal_test.cpp
- test_default_float() : almost_equal_test.cpp
- TEST_EPILOG : unit.hpp
- TEST_FAILED : unit.hpp
- test_format_date_time() : DateTimeTest.cpp
- test_kernel() : MatchedFilterTest.cpp
- test_multiplier() : almost_equal_test.cpp
- test_parse_date_time() : DateTimeTest.cpp
- TEST_PROLOG : unit.hpp
- TEST_PROLOG_EX : unit.hpp
- test_pvalue() : NoiseTest.cpp
- test_real() : erfTest.cpp
- test_real_wrapper() : erfTest.cpp
- test_SampledData() : MatchedFilterTest.cpp
- test_series() : erfTest.cpp
- test_SNR() : PeakFinderTest.cpp
- TEST_SPECTRUM_MSX : SpectrumList_DemuxTest.cpp
- TEST_SPECTRUM_MSX_DEMUX_INDEX : SpectrumList_DemuxTest.cpp
- TEST_SPECTRUM_MSX_ORIGINAL : SpectrumList_DemuxTest.cpp
- TEST_SPECTRUM_OVERLAP : SpectrumList_DemuxTest.cpp
- TEST_SPECTRUM_OVERLAP_DEMUX_INDEX : SpectrumList_DemuxTest.cpp
- TEST_SPECTRUM_OVERLAP_ORIGINAL : SpectrumList_DemuxTest.cpp
- test_time_from_OADATE() : DateTimeTest.cpp
- test_v3() : SpectrumList_MSn_Test.cpp
- test_xml_datetime() : DateTimeTest.cpp
- testAbbreviateByteSize() : FilesystemTest.cpp
- testAccept() : ReaderTest.cpp
- testAddition() : FrequencyDataTest.cpp
- testAllDataProcessing() : MSDataTest.cpp
- testAlternativeProtein() : MinimumPepXMLTest.cpp
- testAmbiguousResidue() : DiffTest.cpp, IOTest.cpp
- testAminoAcidModification() : MinimumPepXMLTest.cpp
- testAminoAcids : AminoAcidTest.cpp
- testAnalysisCollection() : IOTest.cpp, DiffTest.cpp
- testAnalysisData() : DiffTest.cpp, IOTest.cpp
- testAnalysisProtocolCollection() : DiffTest.cpp, IOTest.cpp
- testAnalysisResult() : MinimumPepXMLTest.cpp
- testAnalysisSampleCollection() : DiffTest.cpp, IOTest.cpp, ReferencesTest.cpp
- testAnalysisSoftware() : DiffTest.cpp, IOTest.cpp
- testAnalyzer() : LegacyAdapterTest.cpp
- testArray : SavitzkyGolaySmootherTest.cpp, OrderedPairTest.cpp
- testArrayX : WhittakerSmootherTest.cpp
- testArrayY : WhittakerSmootherTest.cpp
- testAutomaticUpdate() : MSDataCacheTest.cpp
- testBadFile() : BinaryDataEncoderTest.cpp
- testBadXML() : SAXParserTest.cpp
- testBanded() : LinearSolverTest.cpp
- testBandedComplex() : LinearSolverTest.cpp
- testBasic() : MagnitudeLorentzianTest.cpp, SpectrumIteratorTest.cpp, ParabolaTest.cpp
- testBibliographicReference() : DiffTest.cpp, IOTest.cpp
- testBinaryDataArray() : DiffTest.cpp, IOTest.cpp, ReferencesTest.cpp
- testBinaryDataArrayExternalMetadata() : IOTest.cpp
- testBinaryDataOnly() : DiffTest.cpp
- testBMS1 : SpectrumList_MSn_Test.cpp
- testBMS2 : SpectrumList_MSn_Test.cpp
- testBombesin() : FeatureDetectorPeakelTest.cpp, FeatureDetectorTuningTest.cpp
- testBSADigestion() : DigestionTest.cpp
- testCancel() : IterationListenerTest.cpp
- testChargeStateCalculators : SpectrumList_ChargeFromIsotopeTest.cpp, SpectrumList_ChargeStateCalculatorTest.cpp
- testChargeStateCalculatorsSize : SpectrumList_ChargeFromIsotopeTest.cpp, SpectrumList_ChargeStateCalculatorTest.cpp
- testChromatogram() : DiffTest.cpp, ReferencesTest.cpp, IOTest.cpp
- testChromatogramList() : DiffTest.cpp, IOTest.cpp
- testChromatogramListWithPositions() : IOTest.cpp
- testChromatograms() : MSDataTest.cpp
- testCleavageAgent() : IdentDataTest.cpp
- testCleavageAgents() : DigestionTest.cpp
- testCMS1_v3 : SpectrumList_MSn_Test.cpp
- testCMS2 : SpectrumList_MSn_Test.cpp
- testCMS2_v3 : SpectrumList_MSn_Test.cpp
- testComplex() : LinearSolverTest.cpp
- testComponent() : DiffTest.cpp, IOTest.cpp
- testComponentList() : DiffTest.cpp, IOTest.cpp, ReferencesTest.cpp
- testCompound() : DiffTest.cpp
- testConceptChecking() : MZRTFieldTest.cpp
- testConfiguration() : BinaryDataEncoderTest.cpp, DiffTest.cpp
- testContact() : DiffTest.cpp
- testContactRole() : DiffTest.cpp, IOTest.cpp, ReferencesTest.cpp
- testContacts() : ReferencesTest.cpp
- testContainer() : OrderedPairTest.cpp
- testContains() : IntegerSetTest.cpp
- testConversion() : IdentDataTest.cpp
- testCreation() : PeakDetectorMatchedFilterTest.cpp, PeakDetectorNaiveTest.cpp
- testCV() : IOTest.cpp, diff_std_test.cpp
- testCVMap() : KwCVMapTest.cpp
- testCVMapIO() : KwCVMapTest.cpp
- testCVParam() : diff_std_test.cpp, IOTest.cpp
- testData() : FrequencyEstimatorSimpleTest.cpp, MagnitudeLorentzianTest.cpp, ZeroSampleFillerTest.cpp, LocalMaximumPeakDetectorTest.cpp, CwtPeakDetectorTest.cpp, SavitzkyGolaySmootherTest.cpp
- testData2_LocalMax() : FrequencyEstimatorSimpleTest.cpp
- testData2_Parabola() : FrequencyEstimatorSimpleTest.cpp
- testData_ : PeakDetectorMatchedFilterTestData.hpp, PeakExtractorTest.cpp, PrecursorRecalculatorDefaultTest.cpp
- testDatabaseTranslation() : DiffTest.cpp
- testDataBegin_ : PrecursorRecalculatorDefaultTest.cpp
- testDataCalibrationA_ : PeakDetectorMatchedFilterTestData.hpp
- testDataCalibrationB_ : PeakDetectorMatchedFilterTestData.hpp
- testDataCollection() : DiffTest.cpp, IOTest.cpp
- testDataEnd_ : PrecursorRecalculatorDefaultTest.cpp
- testDataObservationDuration_ : PeakDetectorMatchedFilterTestData.hpp
- testDataProcessing() : DiffTest.cpp, IOTest.cpp, ReferencesTest.cpp
- testDataSize : CwtPeakDetectorTest.cpp, LocalMaximumPeakDetectorTest.cpp, SavitzkyGolaySmootherTest.cpp, ZeroSampleFillerTest.cpp
- testDataSize_ : PrecursorRecalculatorDefaultTest.cpp, PeakDetectorMatchedFilterTestData.hpp, PeakExtractorTest.cpp
- testDBSequence() : IOTest.cpp, DiffTest.cpp, ReferencesTest.cpp
- testDecoding() : SAXParserTest.cpp
- testDefault() : MSDataCacheTest.cpp
- testDefaultTabHandler() : TabReaderTest.cpp
- testDeisotopeCalculators : MS2DeisotoperTest.cpp
- TestDeisotopers : SpectrumList_PeakFilterTest.cpp
- testDeisotopersSize : SpectrumList_PeakFilterTest.cpp
- testDeisotopeSize : MS2DeisotoperTest.cpp
- testDeisotoping() : SpectrumList_PeakFilterTest.cpp
- testDerivatives() : ParametrizedFunctionTest.cpp
- testDetector() : LegacyAdapterTest.cpp
- testDifferenceQuotient() : ParametrizedFunctionTest.cpp
- testDigestedPeptides() : IdentDataTest.cpp
- testDigestionCriteria() : DigestionTest.cpp
- testDigestionMetadata() : DigestionTest.cpp
- testDone() : SAXParserTest.cpp
- testDouble() : LinearLeastSquaresTest.cpp, LinearSolverTest.cpp
- testDoubleQR() : LinearLeastSquaresTest.cpp, LinearSolverTest.cpp
- testDuplicateId() : Serializer_FASTA_Test.cpp
- testEnzymaticSearchConstraint() : MinimumPepXMLTest.cpp
- testEnzyme() : DiffTest.cpp, IOTest.cpp
- testEnzymes() : DiffTest.cpp, IOTest.cpp
- testEquality() : TruncatedLorentzianParametersTest.cpp, OrderedPairTest.cpp
- testErrorFunction() : ParametrizedFunctionTest.cpp
- testErrorLorentzian() : ParametrizedFunctionTest.cpp
- testETDMassFilterData : SpectrumList_PeakFilterTest.cpp
- testETDMassFilterDataSize : SpectrumList_PeakFilterTest.cpp
- testEven() : ChromatogramList_FilterTest.cpp, SpectrumList_FilterTest.cpp
- testEvenMS2() : SpectrumList_FilterTest.cpp
- testEvidence() : DiffTest.cpp
- testExactFit() : ParabolaTest.cpp
- testExactFitQR() : LinearLeastSquaresTest.cpp
- testExpandPathmask() : FilesystemTest.cpp
- testExtraction() : OrderedPairTest.cpp
- testFeature() : PeakDataTest.cpp
- testFeatureAux() : PeakDataTest.cpp
- testFeatureDetectorSimple() : FeatureDetectorSimpleTest.cpp
- testFeatureField() : MZRTFieldTest.cpp
- testFile() : SHA1CalculatorTest.cpp, SHA1_ostream_test.cpp, ExtendedReadTest.cpp
- testFileContent() : DiffTest.cpp
- testFileDescription() : IOTest.cpp, ReferencesTest.cpp, DiffTest.cpp
- testFilename() : PeptideID_pepXMLTest.cpp
- testFileReads() : SpectrumListCacheTest.cpp
- testFilter() : DiffTest.cpp, IOTest.cpp
- testFind() : DigestionTest.cpp, FrequencyDataTest.cpp, MZRTFieldTest.cpp, PeakDetectorNaiveTest.cpp, PeakDetectorMatchedFilterTest.cpp
- testFit() : MagnitudeLorentzianTest.cpp
- testFloating() : diff_std_test.cpp
- testForEach() : SpectrumIteratorTest.cpp
- testFormula() : ChemistryTest.cpp
- testFormulaData : ChemistryTest.cpp
- testFormulaDataSize : ChemistryTest.cpp
- testFormulaOperations() : ChemistryTest.cpp
- testFragmentArray() : DiffTest.cpp, IOTest.cpp
- testFragmentations : PeptideTest.cpp
- testFragmentationsSize : PeptideTest.cpp
- testGaussian_Bombesin2() : FeatureModelerTest.cpp
- testGaussian_Bombesin3() : FeatureModelerTest.cpp
- testGet() : ReaderTest.cpp
- testHasBinaryData() : SpectrumList_FilterTest.cpp
- testIdentData() : DiffTest.cpp, IOTest.cpp
- testIdentifiable() : DiffTest.cpp, IOTest.cpp
- testIdentifiableParamContainer() : IOTest.cpp
- testIdentifyFileFormat() : ReaderTest.cpp
- testIDParsing() : MSDataTest.cpp
- testIdSet() : ProteinList_FilterTest.cpp
- testIDTranslation() : cvtest.cpp
- testIndexSet() : ChromatogramList_FilterTest.cpp, ProteinList_FilterTest.cpp, SpectrumList_FilterTest.cpp
- testInfo() : ChemistryTest.cpp
- testInputs() : DiffTest.cpp, IOTest.cpp
- testInstantiation() : IntegerSetTest.cpp
- testInstantiationWithNull() : IsotopeEnvelopeEstimatorTest.cpp
- testInstrument() : DiffTest.cpp
- testInstrumentConfiguration() : IOTest.cpp, DiffTest.cpp, ReferencesTest.cpp, LegacyAdapterTest.cpp
- testIntegerSet() : SpectrumIteratorTest.cpp
- testIntegral() : diff_std_test.cpp
- testIntegralReally() : diff_std_test.cpp
- testIntensityThresholding() : SpectrumList_PeakFilterTest.cpp
- testIntervalExtraction() : IntegerSetTest.cpp
- testIntervalExtraction2() : IntegerSetTest.cpp
- testIntExtraction() : IntegerSetTest.cpp
- testInvarianceUnderProteinProphet() : MinimumPepXMLTest.cpp
- testIO() : TruncatedLorentzianParametersTest.cpp, MZToleranceTest.cpp
- testIonisation() : LegacyAdapterTest.cpp
- testIonType() : DiffTest.cpp, IOTest.cpp
- testIs() : ParamTypesTest.cpp
- testIsA() : cvtest.cpp
- testIsChildOf() : ParamTypesTest.cpp
- testIsolationWindowFilter() : SpectrumList_PeakFilterTest.cpp
- testIStream() : PeptideID_flatTest.cpp, PeptideID_pepXMLTest.cpp
- testIsWithinTolerance() : MZToleranceTest.cpp
- testIteratorEquality() : SpectrumIteratorTest.cpp
- testLeastSquares() : ParabolaTest.cpp
- testLeastSquaresQR() : LinearLeastSquaresTest.cpp
- testMassAbundance() : ChemistryTest.cpp
- testMassAnalyzerFilter() : SpectrumList_FilterTest.cpp
- testMassTable() : DiffTest.cpp, IOTest.cpp
- testMatch() : MinimumPepXMLTest.cpp
- testMatchData() : MinimumPepXMLTest.cpp
- testMaxPrecisionDiff() : DiffTest.cpp
- testMeasure() : DiffTest.cpp, IOTest.cpp, ReferencesTest.cpp
- testMemoryMRUCache() : SpectrumListCacheTest.cpp
- testMetadata() : MSDataCacheTest.cpp
- testMetadataFixers : SpectrumList_MetadataFixerTest.cpp
- testMetadataFixersSize : SpectrumList_MetadataFixerTest.cpp
- testMGF : SpectrumList_MGF_Test.cpp
- testMillion() : SHA1CalculatorTest.cpp
- testModAminoAcidMass() : MinimumPepXMLTest.cpp
- testModeBinaryDataOnly() : SpectrumListCacheTest.cpp
- testModelAndManufacturer() : LegacyAdapterTest.cpp
- testModeMetaDataAndBinaryData() : SpectrumListCacheTest.cpp
- testModeMetaDataAndSequence() : ProteinListCacheTest.cpp
- testModeMetaDataOnly() : ProteinListCacheTest.cpp, SpectrumListCacheTest.cpp
- testModeOff() : SpectrumListCacheTest.cpp, ProteinListCacheTest.cpp
- testModification() : DiffTest.cpp, IOTest.cpp, DiffTest.cpp
- testModificationInfo() : MinimumPepXMLTest.cpp
- testModifications : PeptideTest.cpp
- testModificationsSize : PeptideTest.cpp
- testModifiedPeptides : PeptideTest.cpp
- testModifiedPeptidesSize : PeptideTest.cpp
- testMRU() : MSDataCacheTest.cpp
- testMS1 : SpectrumList_MSn_Test.cpp
- testMS2 : SpectrumList_MSn_Test.cpp
- testMS2_v3 : SpectrumList_MSn_Test.cpp
- testMS2Activation() : SpectrumList_FilterTest.cpp
- TestMS2DenoiseArr : SpectrumList_PeakFilterTest.cpp
- testMS2DenoiseSize : SpectrumList_PeakFilterTest.cpp
- testMS2Denoising() : SpectrumList_PeakFilterTest.cpp
- testMSData() : DiffTest.cpp, IOTest.cpp, ReferencesTest.cpp
- testMSDataConstruction() : SpectrumIteratorTest.cpp
- testMSDiffUpdate() : DiffTest.cpp
- testMSIHandler() : TabReaderTest.cpp
- testMSInspectIStream() : PeptideID_flatTest.cpp
- testMSLevelSet() : SpectrumList_FilterTest.cpp
- testMSMSPipelineAnalysis() : MinimumPepXMLTest.cpp
- testMSMSRunSummary() : MinimumPepXMLTest.cpp
- testMSXOnly() : SpectrumList_DemuxTest.cpp
- testMulti() : FeatureModelerTest.cpp
- testMultiplePeaks() : PeakFitterTest.cpp
- testMZ() : MZToleranceTest.cpp
- testMZPresentFilter() : SpectrumList_FilterTest.cpp
- testNamedParamContainer() : IOTest.cpp
- testNested() : SAXParserTest.cpp
- testNoAutoUnescape() : SAXParserTest.cpp
- testNoise_ : NoiseTest.cpp, PeakFinderTest.cpp
- testNoiseFloor() : FrequencyDataTest.cpp
- testNoiseFloorVarianceCalculation() : FrequencyDataTest.cpp
- testNontrypticBSA() : DigestionTest.cpp
- testNormalization() : IsotopeCalculatorTest.cpp, XMLWriterTest.cpp
- testObject() : IOTest.cpp
- testObject_ChromatogramList() : IOTest.cpp
- testObject_SpectrumList() : IOTest.cpp
- testObjectWithMSData() : IOTest.cpp
- testOperators : PeptideTest.cpp
- testOperatorsSize : PeptideTest.cpp
- testOrganization() : DiffTest.cpp, IOTest.cpp
- testOtherRelations() : cvtest.cpp
- testOverlapOnly() : SpectrumList_DemuxTest.cpp
- testPairCount_ : Base64Test.cpp
- testPairs_ : Base64Test.cpp
- testParabola() : PeakFitterTest.cpp
- testParamContainer() : ParamTypesTest.cpp, TraDataTest.cpp, ReferencesTest.cpp, diff_std_test.cpp
- testParameterConversion() : TruncatedLorentzianParametersTest.cpp
- testParamGroup() : diff_std_test.cpp, IOTest.cpp
- testParse() : IntegerSetTest.cpp
- testParse2() : IntegerSetTest.cpp
- testPathContentPairArray : FilesystemTest.cpp
- testPathContentPairArraySize : FilesystemTest.cpp
- testPathmaskArray : FilesystemTest.cpp
- testPathmaskArraySize : FilesystemTest.cpp
- testPeak() : PeakDataTest.cpp
- testPeakData() : PeakDataTest.cpp
- testPeakel() : PeakDataTest.cpp
- testPeakelAux() : PeakDataTest.cpp
- testPeakelConstruction() : PeakDataTest.cpp
- testPeakelField() : MZRTFieldTest.cpp
- testPeakEquality() : PeakDataTest.cpp
- testPeakFamily() : PeakDataTest.cpp
- testPeptide() : DiffTest.cpp, IOTest.cpp, DiffTest.cpp
- testPeptideEvidence() : DiffTest.cpp, IOTest.cpp
- testPeptideHypothesis() : DiffTest.cpp, IOTest.cpp
- testPeptideProphetResult() : MinimumPepXMLTest.cpp
- testPeptides : PeptideTest.cpp
- testPeptidesSize : PeptideTest.cpp
- testPepXMLSpecificity() : Serializer_pepXML_Test.cpp
- testPerson() : DiffTest.cpp, IOTest.cpp
- testPolysiloxane() : ChemistryTest.cpp
- testPPM() : MZToleranceTest.cpp
- testPrecursor() : DiffTest.cpp, ReferencesTest.cpp, IOTest.cpp
- testPrecursorMassRemoval() : SpectrumList_PeakFilterTest.cpp
- testPrecursorRefine() : SpectrumList_PrecursorRefineTest.cpp
- testPredicate() : MZRTFieldTest.cpp
- testPredicate_Feature() : MZRTFieldTest.cpp
- testPrediction() : DiffTest.cpp
- testProbabilites() : IsotopeCalculatorTest.cpp
- testProcessingMethod() : DiffTest.cpp, IOTest.cpp
- testProduct() : ReferencesTest.cpp, IOTest.cpp, DiffTest.cpp
- testProjected() : SHA1CalculatorTest.cpp
- testPropertyValues() : cvtest.cpp
- testProtein() : DiffTest.cpp
- testProteinAmbiguityGroup() : DiffTest.cpp, IOTest.cpp
- testProteinDetection() : DiffTest.cpp, IOTest.cpp
- testProteinDetectionHypothesis() : DiffTest.cpp, IOTest.cpp
- testProteinDetectionList() : DiffTest.cpp, IOTest.cpp
- testProteinDetectionProtocol() : DiffTest.cpp, IOTest.cpp
- testProteinList() : DiffTest.cpp
- testProteinListSimple() : ProteomeDataTest.cpp
- testProteomeData() : DiffTest.cpp
- testProvider() : DiffTest.cpp, IOTest.cpp
- testQ3RatioResult() : MinimumPepXMLTest.cpp
- testQR() : qrTest.cpp
- testRead() : ReaderTest.cpp
- testReader() : MSDataFileTest.cpp, ProteomeDataFileTest.cpp
- testRealDatabase() : IPIFASTADatabaseTest.cpp
- testRectangularQR() : qrTest.cpp
- testReflector() : qrTest.cpp
- testRegexCVMap() : KwCVMapTest.cpp
- testRegexCVMapIO() : KwCVMapTest.cpp
- testRemove() : IterationListenerTest.cpp
- testResidue() : IOTest.cpp, DiffTest.cpp
- testRetentionTime() : DiffTest.cpp
- testReversedList() : ProteinList_DecoyGeneratorTest.cpp
- testRootElement() : SAXParserTest.cpp
- testRun() : IOTest.cpp, DiffTest.cpp, ReferencesTest.cpp
- testSample() : DiffTest.cpp, IOTest.cpp, DiffTest.cpp, IOTest.cpp
- testSampleComponent() : DiffTest.cpp
- testSampleEnzyme() : MinimumPepXMLTest.cpp
- testSamples() : TruncatedLorentzianParametersTest.cpp
- testSaxParserString() : SAXParserTest.cpp
- testScan() : IOTest.cpp, ReferencesTest.cpp, DiffTest.cpp, PeakDataTest.cpp
- testScanEventSet() : SpectrumList_FilterTest.cpp
- testScanList() : DiffTest.cpp, IOTest.cpp, ReferencesTest.cpp
- testScanNumberSet() : SpectrumList_FilterTest.cpp
- testScanSettings() : DiffTest.cpp, IOTest.cpp, ReferencesTest.cpp
- testScanSummerCalculators : SpectrumList_ScanSummerTest.cpp
- testScanSummerSize : SpectrumList_ScanSummerTest.cpp
- testScanTimeRange() : SpectrumList_FilterTest.cpp
- testSearchDatabase() : DiffTest.cpp, IOTest.cpp, MinimumPepXMLTest.cpp
- testSearchHit() : MinimumPepXMLTest.cpp
- testSearchModification() : DiffTest.cpp, IOTest.cpp
- testSearchResult() : MinimumPepXMLTest.cpp
- testSearchSummary() : MinimumPepXMLTest.cpp
- testSelectedIndices() : ProteinList_FilterTest.cpp, SpectrumList_FilterTest.cpp, ChromatogramList_FilterTest.cpp
- testSemitrypticBSA() : DigestionTest.cpp
- testSemitrypticMethionineClippingBSA() : DigestionTest.cpp
- testSequenceCollection() : DiffTest.cpp, IOTest.cpp
- testSerialize() : Serializer_mzid_Test.cpp, Serializer_pepXML_Test.cpp, Serializer_protXML_Test.cpp
- testSerializeRead() : Serializer_Text_Test.cpp
- testSerializeReally() : Serializer_pepXML_Test.cpp
- testSerializeWrite() : Serializer_Text_Test.cpp
- testSHA1() : MSDataFileTest.cpp
- testShift() : SpectrumList_MZRefinerTest.cpp
- testShuffledList() : ProteinList_DecoyGeneratorTest.cpp
- testSieve() : SpectrumIteratorTest.cpp
- testSimpleRectangleQR() : LinearLeastSquaresTest.cpp
- testSnapModifications() : IdentDataTest.cpp
- testSoftware() : PeakDataTest.cpp, DiffTest.cpp, IOTest.cpp, LegacyAdapterTest.cpp, DiffTest.cpp, IOTest.cpp
- testSource() : DiffTest.cpp
- testSourceFile() : DiffTest.cpp, IOTest.cpp, DiffTest.cpp, IOTest.cpp
- testSparse() : LinearSolverTest.cpp
- testSpecificity() : MinimumPepXMLTest.cpp
- testSpectraData() : DiffTest.cpp, IOTest.cpp
- testSpectrum() : ReferencesTest.cpp, DiffTest.cpp, MSnReaderTest.cpp, IOTest.cpp
- testSpectrumIdentification() : DiffTest.cpp, IOTest.cpp
- testSpectrumIdentificationItem() : DiffTest.cpp, IOTest.cpp
- testSpectrumIdentificationList() : DiffTest.cpp, IOTest.cpp
- testSpectrumIdentificationProtocol() : DiffTest.cpp, IOTest.cpp
- testSpectrumIdentificationResult() : IOTest.cpp, DiffTest.cpp
- testSpectrumList() : DiffTest.cpp, IOTest.cpp
- testSpectrumListSimple() : MSDataTest.cpp
- testSpectrumListWithPositions() : IOTest.cpp
- testSpectrumListWriteProgress() : IOTest.cpp
- testSpectrumQuery() : MinimumPepXMLTest.cpp
- testStatic() : SHA1CalculatorTest.cpp
- testStream() : SHA1CalculatorTest.cpp
- testString() : diff_std_test.cpp
- testStripChargeFromConventionalSpectrumId() : Serializer_pepXML_Test.cpp
- testSubstitutionModification() : IOTest.cpp, DiffTest.cpp
- testSulfur() : IsotopeTableTest.cpp
- testSynonyms() : cvtest.cpp
- testTarget() : DiffTest.cpp
- testThermoFilterFilter() : SpectrumList_FilterTest.cpp
- testThreadSafety() : BinaryIndexStreamTest.cpp, cvtest.cpp, AminoAcidTest.cpp, DigestionTest.cpp, PeptideTest.cpp, Serializer_FASTA_Test.cpp, ChemistryTest.cpp
- testThreadSafetyWorker() : DigestionTest.cpp, ChemistryTest.cpp, Serializer_FASTA_Test.cpp, PeptideTest.cpp, AminoAcidTest.cpp, cvtest.cpp, BinaryIndexStreamTest.cpp
- testThresholders : SpectrumList_PeakFilterTest.cpp
- testThresholdersSize : SpectrumList_PeakFilterTest.cpp
- testTime() : IterationListenerTest.cpp
- testToy() : PeakelPickerTest.cpp
- testToyExample() : PeakelGrowerTest.cpp
- testTraData() : ReferencesTest.cpp, IOTest.cpp, DiffTest.cpp
- testTransition() : DiffTest.cpp, ReferencesTest.cpp
- testTranslation() : Serializer_pepXML_Test.cpp
- testTrypticBSA() : DigestionTest.cpp
- testUpdateRequest() : MSDataCacheTest.cpp
- testUpperBound() : IntegerSetTest.cpp
- testUsage() : IsotopeCalculatorTest.cpp, SpectrumListFactoryTest.cpp, ProteinListFactoryTest.cpp, ChromatogramListFactoryTest.cpp
- testUserParam() : diff_std_test.cpp, IOTest.cpp
- testValidation() : DiffTest.cpp
- testVectorCustomPair() : OrderedPairTest.cpp
- testVectorDouble() : OrderedPairTest.cpp
- testVectorIO() : KwCVMapTest.cpp
- testVectorOrderedPair() : OrderedPairTest.cpp
- testWeightedLeastSquares() : ParabolaTest.cpp
- testWrap() : SpectrumListFactoryTest.cpp, ProteinListFactoryTest.cpp, ChromatogramListFactoryTest.cpp
- testWrapActivation() : SpectrumListFactoryTest.cpp
- testWrapChargeState() : SpectrumListFactoryTest.cpp
- testWrapChargeStatePredictor() : SpectrumListFactoryTest.cpp
- testWrapDefaultArrayLength() : SpectrumListFactoryTest.cpp
- testWrapMassAnalyzer() : SpectrumListFactoryTest.cpp
- testWrapMSLevel() : SpectrumListFactoryTest.cpp
- testWrapMZPresent() : SpectrumListFactoryTest.cpp
- testWrapMZWindow() : SpectrumListFactoryTest.cpp
- testWrapPolarity() : SpectrumListFactoryTest.cpp
- testWrapPrecursorMzSet() : SpectrumListFactoryTest.cpp
- testWrapScanTimeRange() : SpectrumListFactoryTest.cpp
- testWrapSortScanTime() : SpectrumListFactoryTest.cpp
- testWrapThermoScanFilter() : SpectrumListFactoryTest.cpp
- testWrapTitleMaker() : SpectrumListFactoryTest.cpp
- testWriteRead() : Serializer_traML_Test.cpp, Serializer_FASTA_Test.cpp, Serializer_mzXML_Test.cpp, Serializer_mzML_Test.cpp, Serializer_MSn_Test.cpp, Serializer_MGF_Test.cpp, Serializer_mzML_Test.cpp
- testWriteReadBMS1() : Serializer_MSn_Test.cpp
- testWriteReadBMS2() : Serializer_MSn_Test.cpp
- testWriteReadCMS1() : Serializer_MSn_Test.cpp
- testWriteReadCMS2() : Serializer_MSn_Test.cpp
- testWriteReadMS1() : Serializer_MSn_Test.cpp
- testWriteReadMS2() : Serializer_MSn_Test.cpp
- testZeroSamplesFilter() : SpectrumList_PeakFilterTest.cpp
- Text : FrequencyData.hpp
- textabc2_ : SHA1CalculatorTest.cpp
- textabc_ : SHA1CalculatorTest.cpp
- textBrown_ : SHA1_ostream_test.cpp, SHA1CalculatorTest.cpp
- Th : Chemistry.hpp
- Threonine : AminoAcid.hpp
- Ti : Chemistry.hpp
- TIC_MZRANGE_ARG : RegionTIC.hpp
- Tiny : Image.hpp
- Tl : Chemistry.hpp
- Tm : Chemistry.hpp
- Top : Image.hpp
- Tryptophan : AminoAcid.hpp
- TYPEDEF_SHARED_PTR : IdentData.hpp
- Tyrosine : AminoAcid.hpp